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How to Publish a Scientific Paper

Updated: Nov 25

A scientific paper or scientific article is a unique form of academic writing, which differs from most other forms of professional and academic writing in that it has to be published. Publishing scientific papers is a vital part of the lives and careers of researchers and scientists.


Most researchers can only get funding or promotions after publishing original work in peer-reviewed journals. A scientific paper that hasn’t been published in a peer-reviewed journal is more or less gray literature. That is literature with academic merit that is not verified or that cannot be fully trusted.

Three scientists in a lab

Many scientists and researchers grow anxious at the idea of writing and publishing a paper. This may not all be justified. Research and research writing is indeed difficult. However, the good thing about academic writing or research writing is that it is highly stylized.


It has a rigid format called IMRaD, which stands for Introduction, Methods, Results, and Discussion. It’s an easy-to-follow yet rigorous format for both researchers who want to provide a record of their work and scientific peers and lay readers who are interested in reading such work. 


If you read enough scientific papers or articles and know the right examples to follow, then writing and publishing a research paper will not be that difficult. In this article, I focus on the best processes and practices for getting your paper published. 


What is a scientific paper? 


A scientific article or paper is a scientific report that includes original results as well as an accurate description of the rigorous process that led to these results. Most importantly, this scientific report has to be published in a peer-reviewed journal. 


There are many different types of scientific papers. They include:


  1. Original research articles. These are articles that report on original research findings. They are the classic form of scientific papers, and this is what we mostly focus on here.

  2. Review articles. This reviews the literature in a specific field of research. 

  3. Case studies. These studies rely on specific individual cases and are quite popular in the field of medicine. 

  4. Methodology articles. These analyze the methods used in a research process and typically focus on critiquing old or current methodologies and coming up with new ones. 

  5. Theory / Perspective articles. These scientific papers critically examine the theories that underlie research papers in a specific field.  


In this article, as mentioned earlier, the focus will be original articles. Original publications represent the production of new scientific knowledge, which is the foundation on which science is built. 


The process of publishing a scientific paper

 

The process of publishing your scientific paper does not begin with finding a journal after writing your paper. Instead, it begins with your research. You can only get published if the research you do is valid and relevant to the scientific community. However, your research does not exist in a vacuum.


Even before you start the process of doing research, you should be thinking to what end this research is being done. Research has to be published. So, this means you should have a good idea of the journal that you want to publish in. This will influence, if not the research you do, then at least the angle from which you approach writing about your research and its results.


Based on this, here is a procedure to follow from publishing a scientific paper:


Step 1. Make sure that your research work is valid and appropriate or relevant


Step 2. Choose a target journal or  small set of journals that you would like to publish in and study them


Step 3. Write your manuscript


Step 4. Submit your manuscript


Step 5. Revise and edit based on review


Step 6. Publish your paper


In the following section, I describe each step involved in the process. 

Steps to publishing a scientific paper

Step 1. Make sure your research is valid and appropriate


All good scientific papers are based on solid research. Good research relies on clear procedures that are well-recorded and that can be verified or repeated. Not only that, you need to ensure that your research is relevant. 


There’s no point in doing good research if does not solve a real-world problem or if there’s no demand for it in the pages of high-end scientific journals. As a result, it would be a good idea to stay up-to-date on the latest trends and developments in your field of research. 


In particular, you should keep an eye out for research that “makes the news.” Some journals are keen on publishing work that is socially relevant. This means that research that makes the news would be the research that is deemed to be important and most likely to be published. 


Here is a list of things that your research should include to make it more publish-worthy: 


  • Your research should make a novel contribution

  • Your findings should be valid and significant

  • Your work should be related to a current hot topic

  • Your research should solve difficult issues or problems


Staying up-to-date with the latest can help you identify which lines of investigation meet the criteria listed above and which are worth pursuing in your lab or in the field.


The importance of collaboration 


Collaboration in research is essential. You could even say that an academic or scientific endeavor is a team effort. When it comes to tackling scientific questions that scientific papers attempt to answer, rarely is a sole researcher capable of tackling that question by themselves. 


Having regular conversations with colleagues can spark new ideas that you by yourself would be unable to come up with. Besides this, different researchers have different specialties. Perhaps, you might not be particularly skilled in recognizing the angle from which to approach reporting the results of your study.


A colleague with more experience in writing and publishing might be able to assist you in “telling a story” from your data or results. There are also cases where collaboration can make up for a lack of resources. Researchers or professors working in different labs may recognize that working together would increase their chances of writing winning grant proposals and eventually research that can be published. 


Collaboration does not necessarily mean only working with colleagues. Many scientific papers that get published begin as theses by master’s or PhD students working in collaboration with their advisors or professors. A well-written thesis or dissertation might serve as raw material for one or several scientific reports that can be published in journals. 


The success of this will depend on how well you collaborate and communicate with a student who may be willing to move on to a non-academic career after graduating, but whose help you might need in turning a lengthy thesis manuscript into a journal article. 


For collaboration, clear communication is vital. This is to avoid any controversy relating to the proper attribution of roles, contributions, and responsibilities relating to the authorship of a scientific paper. 


Step 2. Choose a target journal


The next step involves choosing a target journal. You may even have a few journals in mind before you get the results of your study. But this is the step where you decide the specific journal in which you want your paper to be published. 


To find the right target journal, you should make use of depositories and indexes such as  Scopus and the Web of Sciences or WoS. They can serve as tools that provide you with information such as CiteScore (in the case of Scopus) and Impact Factor (in the case of WoS). The higher the impact factor or the CiteScore, the more prestigious the journal. 


Several journals make it easy to locate such information. The example of the screenshot above is from the Journal of Public Health.  Other information included:


  • Impact factor

  • Submission to the first decision

  • Article publication charges (or APCs)


Before writing your manuscript, you should read the “Author Guidelines” section of your journal. There, the journal describes the scope of the journal and the specific academic style guide that should be followed. Some journals rely on established style guides such as APA and AMA.


In terms of scope, you should ensure that the topic you focus on or the approach from which you approach your results or data. Here is an example of the scope of a specific journal. 


Other journals have their unique house style that you should follow. The table below the various in-text citation and reference formats for commonly used styles in scientific publications. In the “Write your manuscript” section, I will explain the academic and reference styles used in various journals. 


Step 3. Write your manuscript


The manuscript should be written clearly and succinctly and decisions should be made in terms of authorship contribution and responsibility. As mentioned earlier, several journals provide specific guidelines for their journals that should be carefully followed. Most manuscripts or scientific papers follow the IMRaD format. 


This is an acronym for Introduction, Methods, Results, and Discussion. For a more detailed discussion of the IMRaD format, you can take a look at the previous article entitled, How to Write a Scientific Paper: A Definitive Guide


Parts of the manuscript


When it comes to publication, the Introduction, Methods, Results, and Discussion is often referred to as the body of the manuscript. The other parts of the manuscript are called Front Matter and Back Matter. 


Front matter includes sections such as:



The Body of the article includes:



The Back Matter material includes:

 


Each of these should be carefully written according to journal specifications. The table below provides a brief description of what is included in each section. 


Parts of the Manuscript

Description

Recommendation 


Front Matter


Title

This is the name of your article.

  • Should be brief

  • Should be descriptive and accurate

  • Should be grammatically correct

Abstract

This is a concise summary of the article.

  • It should be brief — 250 words or less

  • It should include a summary of Introduction, Methods, Results, and Discussion


Highlights

This describes the main points of the article in three to five bullet points. 

  • Not required by many journals

  • It should also be brief and concise

  • It should be written in complete sentences


Body 


Introduction 

This describes the scope and objectives of the article. 

  • Explain the significance of the problem

  • Narrow the scope to something manageable

  • Include a complete and concise literature review

  • Include hypothesis and research statements

Methods

This describes the process of your research and experiment, as well as the equipment used. 

  • List all materials used, such as equipment and chemicals (e.g., reagents)

  • Provide a concise description of statistical analyses 

  • Include enough information to reproduce the experiment

Results

This section provides the outcomes of your research. 

  • Strive for clarity

  • Leave out extraneous information

  • Organize information in tables

  • Think of including extra information in supplementary tables

Discussion

The Discussion explains your results and attempts to interpret their significance. 

  • Do not over-interpret

  • Don’t be afraid to point out unexpected results

  • Demonstrate how your interpretation supports your results


Conclusion

This summarizes your paper and its significance

  • Keep it concise

  • Describe limitations

  • Make suggestions for improvements for future research


Back Matter


Declarations

This section includes declarations regarding the integrity of work, such as approval from appropriate ethical bodies and declaring a lack of conflict of interests. 

  • Be completely honest 

  • Include declarations of conflict of interest

  • Include declarations of authorship

Acknowledgment

This acknowledges individuals and institutions that helped in supporting your research.

  • Make it concise

  • Include institutions that provided funding

  • Include the names of researchers who provided help in collecting data and other aspects of the research

  • Include other staff that provided help

  • Include the names of institutions that provided funding


Formatting your manuscript


Journals often have detailed instructions regarding formatting your manuscript. However, often this specific information is missing. By formatting, I mean font sizes and styles, spacing, margins, and so on. 


In the absence of this detailed information, it would best to rely on the APA standard for formatting. These guidelines are as follows:


  • Double-space your text 

  • Use margins that are at least 1 inch or 25 mm

  • Use left-justified text or text with a ragged right margin

  • Start each section of the manuscript on a new page

  • Use the headings and subheadings function in Word

  • Include tables and figures at the end

  • Include text showing where figures and table should go


Of course, this is a general guideline. You should always carefully read the Author Guidelines section to make sure that you are closely following the formatting requirements of your target journal. 


Step 4. Submit your manuscript


Most journals have electronic submission systems that you have to use to submit your manuscripts. This is the official channel of submission for most journals. It typically involves uploading your Word document into the system. 


Often the system automatically transforms the Word document into a PDF. Sometimes, in the case of smaller journals, you may have to submit your manuscript through email. 


Cover letter


In the online submission system, you also need to include a cover letter. A cover letter includes the following information:


  • The type of submission: That is, a Scientific paper or review article

  • Declarations that the work is original

  • Declarations that the work is not being considered by other journals

  • Confirmation that all the listed authors qualify to be listed

  • Declaration of no conflicts of interest on the part of authors


You should also make it known whether or not the scientific paper has appeared previously. For example, as a conference paper or thesis. On some occasions, you may even mention a preferred peer reviewer for your paper or even suggest who you don’t want reviewing your paper.


More importantly, provide a brief explanation as to why you think your scientific paper or research results deserve to be published in the journal. Do so by taking into account both the scope of the journal and the importance of your research results. 


For an example of a cover letter, please check out this article: How to Write a Journal Cover Letter


Author contribution


Only authors who qualify to be listed should be included in the list of authors. Just as importantly, you should not exclude authors who qualify to be included as authors. You should also decide who gets to be the Corresponding Author. 


This is the author responsible for all correspondence or communication with the journal before publication. After publication, they will also be in charge of communications with readers who have questions about the validity of their research. 


After submitting the paper, you will typically receive an email notification verifying that the submission was successful. This email notification system will typically inform you of the various stages of publication, such as reviewer responses, editor rejection, or acceptance of your journal for publication. 


Step 5. Revise and edit based on reviewer suggestions


After you submit your paper, it will either get an editor rejection or get passed on for peer review. The peer review process is often lengthy. The journal editor has to locate appropriate peer reviewers, and they have to wait for these peer reviewers to judge the merit of your manuscript.


Peer reviewers are professionals with a background and qualifications in your field of research. Ideally, only scholars qualified would get the chance to review your paper. The review involves the following:


  • Judging the validity of your results

  • The thoroughness of your literature review

  • The strength of your arguments

  • The importance of your results


A good review would include include commentary or questions that should be properly answered. Also, you may have to revise your manuscript according to the recommendations or criticisms of the reviewer. 


Tips to follow when responding to reviewers


Answering reviewers requires a certain level of diplomatic skill. Many reviewers may be harsh in their criticism, but your responses should always be polite and measured. Here are some tips to follow:


  1. Always be polite in your response. For example, begin sentences with phrases such as “Thank you for your suggestions” or “Thank you for pointing out this issue.” 

  2. Make sure you fully answer each comment in accurate detail. Manuscripts are often numbered by line. When answering, ensure that you make references to line numbers to avoid confusion.

  3. Think of using a table format. Include the reviewer's comment in one column and your response in the other.

  4. Make revisions using the Track function in Word. This ensures that the journal editor and reviewers can follow the changes that you make to the manuscript


After one or several other rounds of criticism and revision, your paper will be either accepted or rejected. It all depends on whether or not the reviewer and eventually the editor believe that you have satisfactorily passed the scrutiny of peer review.


Step 6. Publish your paper in the journal


Your paper can either be published as Open Access or Subscription. Subscription means that readers would have to pay to access your paper. However, with Open Access, readers of the journal get free access to your scientific paper. 


Open access may be quite expensive. However, experienced researchers are often in a position to access grant funding to pay these fees. It is not advisable that researchers pay such fees out of pocket. 


EminentEdit's academic editing services


At EminentEdit, we excel in providing teh highest editing standards for scientific papers. We have editors who have published their own papers and who are familiar with the process. So, we know exactly what it takes to get published. 

 

EminentEdit provides editing and proofreading services that are:


  • Fast

  • Affordable

  • Reliable


More importantly, we are adaptable to your specific needs.

Get in touch with one of our representatives for help in editing your manuscript



We know what you want to say. We help you say it better.

 

Our services don't just start with proofreading the final manuscript. We also help from the very start, such as editing and double-checking your research proposal. Our editing services include the following:


  • Substantive editing to improve the quality of your writing on a sentence level

  • Extensive commentary and recommendations to improve literature review, structure, and arguments

  • Proofreading to make sure your writing is grammatically correct with proper spelling and punctuation

  • Help in responding to reviewers

  • Proofreading and editing after peer review recomemndations

  • Assistance in transforming your thesis into a published scientific paper 


Get in touch through our contact page here: CONTACT US AT EMINENT EDIT. Good luck with your research writing!

Cite this EminentEdit article

Antoine, M. (2024, August 02). How to Publish a Scientific Paper. https://www.eminentediting.com/post/how-to-publish-a-scientific-paper



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